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Gene Editing Types and Strategies

Gene Knockout

 

(1) Short fragment removal: Guide RNAs target introns at both sides of exon 2. The number of bases in exon 2 is not a multiple of 3, which can cause a frame-shift mutation.

 

(2) Frame-shift mutation: Guide RNAs target the exon. The base number of the deleted exon is not a multiple of 3, which can cause a frame-shift mutation.

 

(3) Large fragment removal: Complete removal of the coding sequence to achieve the gene knockout.

 

Gene Point Mutation

 

The gRNAs, Cas9 and the Donor vector are co-transferred into the target cells by nucleofection. After the gRNA/Cas9 complex causes a DNA double-strand break at the targeting site, the Donor fragment carrying the designed point mutation is used as a template for homologous recombination repair (HDR), thus being able to introduce the designed point mutation into the targeting site of the genome.

 

 

Gene fragment Knockin

 

(1) Knockin of a fusion protein fragment (such as an EGFP tag) at a specific locus.

 

 

(2) Knockout of a specific gene plus knockin of an exogenous gene.

 

Gene Overexpression

 

The vector expressing the target gene will be transferred into the selected cell lines by either lentivirus transduction or nucleofection. After drug screening, the stable cell lines will be selected.

Gene Knockdown

 

The knockdown vector will be transferred into the selected cell lines by either lentivirus transduction or nucleofection. After drug screening, the stable cell lines will be selected.

Work Flow

Project Report and Final Product

  • Positive clone screening report
  • Cell cryopreservation tube

Types of Gene Editing Cell Lines (successfully generated)

 

Classification Cell Line Name Abbreviation

Urinary System

Human bladder carcinoma cell line TCCSUP
Human bladder carcinoma cell line 5637
Human Bladder Transitional Cell Carcinoma Cell Line T24
Human Embryonic Kidney Cell Line HEK293
Human Embryonic Kidney Cell Line 293T
Human prostate carcinoma cell line 22RV1
Madin-Darby Canine Kidney Cell Line MDCK
Distal nephron cell line (Distal nephron cell line JU4s

Blood and Lymphatic System

Mouse Macrophage Cell Line RAW264.7
Porcine Alveolar Macrophage Cell Line 3D4/21
Human Monocytic Cell Line THP-1
Rat Basophil Leukemia Cell Line RBL-2H3
Human leukemia cell line HL-60
Human T lymphocyte cell line Jurkat, Clone E6-1
Human myelogenous leukemia cell line K-562
Human caucasian histiocytic lymphoma cell line U-937
Human Acute Non-B Non-T Lymphocytic Leukemia Cell Line Reh
Human B Cell Lymphoma Cancer Cell Line U2932

Respiratory System

Human Lung Cancer Cell Line A549
Human Lung Cancer Cell Line Calu-1
Human Lung Squamous Carcinoma Cell Line NCI-H520
Lewis lung carcinoma LLC
Human Lung Cancer Cell Line SK-MES-1
Human Lung Squamous Cell Carcinoma Cell Line NCI-H226
Human Non-small Cell Lung Carcinoma Cell Line NCI-H1299
Human Non-small Cell Lung Carcinoma Cell Line HCC827
Human Small Cell Lung Cancer Cell Line H69AR
Human Bronchial Epithelial Cell Line BEAS-2B
Human Bronchial Epithelial Cell Line 16HBE
Human hypopharyngeal carcinoma cell line FaDu
Chinese hamster lung cells V79

Endocrine System

Human Breast Cancer Cell Line MDA-MB-231
Human Breast Cancer Cell Line MDA-MB-468
Human Breast Cancer Cell Line MDA-MB-453
Human Breast Cancer Cell Line MDA-MB-436
Human Breast Cancer Cell Line ZR-75-1
Human Breast Epithelial Cell Line HBL-100
Rat Breast Cancer Cell Line 4T1
Human Pancreatic Carcinoma Cell Line PANC-1
Human Breast Cancer Cell Line JIMT-1
Human breast cancer cell line MCF-7
Human Breast Adenocarcinoma Cell Line SK-BR-3
Human Metastatic Pancreatic Adenocarcinoma Cell Line AsPC-1
Mouse Pancreatic Cancer Cell Line Pan02
Murine Breast Cancer Cell Line E0771
Human Pancreatic Carcinoma Cell Line MIA PaCa-2
Human prostate cancer cell line PC3
Human Prostate Cancer Cell Line VCaP
Mouse Acinar Pancreatic Cell Line 266-6
Human pancreatic cancer cell line BxPC-3
Human Breast Adenocarcinoma Cell Line T-47D

Circulatory System

Rat Cardiac Myocytes H9C2
Mouse Cardiac Muscle Cell Line HL-1
Human Coronary Artery Endothelial Cell line HCAEC
Mouse Myoblast Cell Line C2C12

Digestive System

Human Colon Cancer Cell Line HCT116
Human Colon Cancer Cell Line SW480
Human Colon Cancer Cell Line SW620
Human Colon Cancer Cell Line HT-29
Human Colon Cancer Cell Line LoVo
Human colon carcinoma cell line RKO
Human caucasian colon adenocarcinoma cell line COLO 205
Murine Colorectal Carcinoma Cell Line MC38
Murine colorectal carcinoma cell line CT26.WT
Human colon adenocarcinoma cell line DLD-1
Human colorectal adenocarcinoma cell line NCI-H716
Human colorectal adenocarcinoma cell line Caco-2
Human colon carcinoma cell line T84
Human Liver Cell Line L-02
Human liver cancer cell line Hep G2
Human Hepatoma Cell Line Hep 3B
Human hepatocellular carcinoma cell line HuH-7
Human Hepatocellular Carcinoma Cell Line SNU-387
Human Hepatocarcinoma Cell Line SMMC-7721
Mouse Hepatoma Cell Line H22
Mouse Hepatoma Cell Line Hepa 1-6
Human hepatobiliary cancer cell line RBE
Human Gastric Cancer Cell Line HGC-27
Human Gastric Cancer Cell Line SGC-7901
Human Gastric Cancer Cell Line MGC80-3
Human gastric cancer cell line AGS
Human Esophageal Squamous Carcinoma Cell Line KYSE-150
Human Esophageal Squamous Carcinoma Cell Line (KYSE-30
Human renal cell carcinoma cell line 786-o
African green monkey kidney cell Vero
Human Renal Cell Carcinoma Cell Line ACHN

Skeleton, Articulus, Soft Tissue, Derma System

Human Osteosarcoma Cell Line MG63
Human bone osteosarcoma epithelial cell line U-2 OS
Human fibrosarcoma cell line HT1080
Human malignant melanoma cell line A-375
Human Melanoma Cell Line M14
Murine melanoma cell line B16-F10
Human Epidermoid Carcinoma Cell Line A431
Mouse myeloma cell line Sp2/0-Ag14
Mouse Skin Cancer Cell Line SCC7
Immortalized Ameloblastoma Cells hTERT-AM

Ocular, Otolaryngologic and Oral System

Rat Muller Cell Line rmc-1
Human Nasopharyngeal Carcinoma Cell Line NPC-43
Human Nasopharyngeal Carcinoma Cell Line cne2z
Human Nasopharyngeal Carcinoma Cell Line CNE-1

Brain and Nervous System

Human Neuroblastoma Cell Line SK-N-SH
Human Neuroblastoma Cell Line SH-SY5Y
Mouse neuroblastoma cell line Neuro-2a
Human Glioblastoma Cell Line U251
Rat Glioblastoma Cell Line C6
Mouse Glioblastoma Cell Line GL261
Mouse Microglial Cell Line BV2
Human glioblastoma cell line U-87 MG
Mouse Anterior Parietal Bone Cell Line MC3T3-E1 Subclone 14
Human Microvascular Endothelial Cell Line hCMECD3
Immortalize Human Microvascular Endothelial Cell Line hCMEC/D3
Mouse Hippocampal Neuron Cell Line HT22

Reproductive System

Human Cervical Carcinoma Cell Line HeLa
Human Cervical Carcinoma Cell Line Hela 229
Human Cervical Squamous Cell Line SiHa
Mouse Embryonic Fibroblasts NIH/3T3
Chinese Hamster Ovary Cell Line CHO-K1
Human Ovarian Cancer Cell Line SK-OV-3
Human Ovarian Cancer Cell Line OVCAR3
Human Choriocarcinoma Cell Line BeWo
Human Ovarian Cancer Cell Line CAOV3
Human Trophoblast Cell Line HTR-8/SVneo
Mouse Pituitary Gonadotrope Cell Line Lbetat2
Mouse Testicular Stromal Cell Line TM3

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